Package: bspcov 1.0.3
bspcov: Bayesian Sparse Estimation of a Covariance Matrix
Bayesian estimations of a covariance matrix for multivariate normal data. Assumes that the covariance matrix is sparse or band matrix and positive-definite. Methods implemented include the beta-mixture shrinkage prior (Lee et al. (2022) <doi:10.1016/j.jmva.2022.105067>), screened beta-mixture prior (Lee et al. (2024) <doi:10.1214/24-BA1495>), and post-processed posteriors for banded and sparse covariances (Lee et al. (2023) <doi:10.1214/22-BA1333>; Lee and Lee (2023) <doi:10.1016/j.jeconom.2023.105475>). This software has been developed using funding supported by Basic Science Research Program through the National Research Foundation of Korea ('NRF') funded by the Ministry of Education ('RS-2023-00211979', 'NRF-2022R1A5A7033499', 'NRF-2020R1A4A1018207' and 'NRF-2020R1C1C1A01013338').
Authors:
bspcov_1.0.3.tar.gz
bspcov_1.0.3.zip(r-4.7-any)bspcov_1.0.3.zip(r-4.6-any)bspcov_1.0.3.zip(r-4.5-any)
bspcov_1.0.3.tgz(r-4.6-any)bspcov_1.0.3.tgz(r-4.5-any)
bspcov_1.0.3.tar.gz(r-4.7-any)bspcov_1.0.3.tar.gz(r-4.6-any)
bspcov_1.0.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
bspcov/json (API)
| # Install 'bspcov' in R: |
| install.packages('bspcov', repos = c('https://statjs.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/statjs/bspcov/issues
Last updated from:4e199162d6. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 233 | ||
| source / vignettes | OK | 273 | ||
| linux-release | OK | 225 | ||
| macos-release | OK | 269 | ||
| macos-oldrel | OK | 312 | ||
| windows-devel | OK | 193 | ||
| windows-release | OK | 134 | ||
| windows-oldrel | OK | 163 | ||
| wasm-release | OK | 170 |
Exports:bandPPPbmspcovcv.bandPPPcv.thresPPPestimateproc_colonproc_SP500save_quantile_plotsbmspcovthresPPP
Dependencies:BayesFactorBHcaretCholWishartclasscliclockcodacodetoolscontfraccpp11crayondata.tabledeSolvediagramdigestdplyre1071ellipticfarverFinCovRegularizationFNNforcatsforeachfurrrfuturefuture.applygenericsGGallyggmcmcggplot2ggstatsGIGrvgglobalsgluegowergtablehardhathmshypergeoipredisobanditeratorskernlabKernSmoothkslabelinglatticelavalifecyclelistenvlubridatemagrittrMASSMatrixmatrixcalcMatrixModelsmatrixStatsmclustmgcvModelMetricsmulticoolmvnfastmvtnormnlmennetnumDerivparallellypatchworkpbapplypillarpkgconfigplyrpracmaprettyunitspROCprodlimprogressprogressrproxypurrrquadprogR6RColorBrewerRcppRcppArmadilloRcppEigenrecipesreshape2rlangrpartRSpectraS7scalesshapesparsevctrsSQUAREMstringistringrsurvivaltibbletidyrtidyselecttimechangetimeDatetzdbutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Bayesian Estimation of a Banded Covariance Matrix | bandPPP |
| Bayesian Sparse Covariance Estimation | bmspcov |
| colon dataset | colon |
| CV for Bayesian Estimation of a Banded Covariance Matrix | cv.bandPPP |
| CV for Bayesian Estimation of a Sparse Covariance Matrix | cv.thresPPP |
| Point-estimate of posterior distribution | estimate estimate.bspcov |
| Plot Diagnostics of Posterior Samples and Cross-Validation | plot.bspcov |
| Plot method for postmean.bspcov objects | plot.postmean.bspcov |
| Plot method for quantile.bspcov objects | plot.quantile.bspcov |
| Preprocess Colon Gene Expression Data | proc_colon |
| Preprocess SP500 data | proc_SP500 |
| Quantiles of posterior distribution | quantile.bspcov |
| Save quantile plot to file | save_quantile_plot |
| Bayesian Sparse Covariance Estimation using Sure Screening | sbmspcov |
| SP500 dataset | SP500 |
| Summary of Posterior Distribution | summary.bspcov |
| Bayesian Estimation of a Sparse Covariance Matrix | thresPPP |
| tissues dataset | tissues |